From: A tool for analyzing and visualizing ribo-seq data at the isoform level
Gene name | isoform A versus isoform B | Ribo-seq reads uniquely mapped to the unique exon of each isoform (by Bowtie): A versus B | TL(A) versus TL(B) calculated by RPiso | TL(A) versus TL(B) calculated by by Ribomap |
---|---|---|---|---|
ALG3 | NM_005787 versus NM_001006941 | 91 versus 2 (A > B) | 0.9 versus 0.01 (A > B) | 110 versus 274 (A < B) |
CNRIP1 | NM_015463 versus NM_001111101 | 1 versus 0 (A > B) | 0.01 versus 0 (A > B) | 1 versus 2 (A < B) |
COL5A1 | NM_000093 versus NM_001278074 | 11 versus 0 (A > B) | 0.69 versus 0 (A > B) | 92 versus 1104 (A < B) |
COQ6 | NM_182476 versus NM_182480 | 9 versus 4 (A > B) | 0.3 versus 0.11 (A > B) | 12 versus 162 (A < B) |
CRY2 | NM_021117 versus NM_001127457 | 4 versus 0 (A > B) | 0.06 versus 0 (A > B) | 4 versus 30 (A < B) |
EEF1E1 | NM_001135650 versus NM_004280 | 124 versus 0 (A > B) | 1.76 versus 0.6 (A > B) | 135 versus 232 (A < B) |
EGLN3 | NM_022073 versus NM_001308103 | 30 versus 0 (A > B) | 0.55 versus 0.02 (A > B) | 22 versus 98 (A < B) |
GALNT2 | NM_004481 versus NM_001291866 | 181 versus 0 (A > B) | 4.21 versus 0 (A > B) | 234 versus 1926 (A < B) |
KLF10 | NM_005655 versus NM_001032282 | 53 versus 0 (A > B) | 1.7 versus 0 (A > B) | 89 versus 681 (A < B) |
LCORL | NM_001166139 versus NM_153686 | 22 versus 13 (A > B) | 0.17 versus 0.15 (A > B) | 31 versus 98 (A < B) |
LIG3 | NM_013975 versus NM_002311 | 57 versus 0 (A > B) | 0.4 versus 0.01 (A > B) | 65 versus 300 (A < B) |
LRIG3 | NM_153377 versus NM_001136051 | 9 versus 0 (A > B) | 0.09 versus 0.04 (A > B) | 17 versus 128 (A < B) |
LRP5 | NM_002335 versus NM_001291902 | 3 versus 0 (A > B) | 0.46 versus 0 (A > B) | 321 versus 338 (A < B) |
LYSMD1 | NM_001136543 versus NM_212551 | 7 versus 0 (A > B) | 0.18 versus 0 (A > B) | 7 versus 28 (A < B) |
MAP1S | NM_018174 versus NM_001308363 | 5 versus 0 (A > B) | 0.15 versus 0 (A > B) | 10 versus 135 (A < B) |
MAT2B | NM_013283 versus NM_182796 | 23 versus 0 (A > B) | 3.61 versus 0 (A > B) | 58 versus 1068 (A < B) |
NAF1 | NM_138386 versus NM_001128931 | 127 versus 0 (A > B) | 1.2 versus 0 (A > B) | 133 versus 406 (A < B) |
NDUFA11 | NM_175614 versus NM_001193375 | 28 versus 0 (A > B) | 1.92 versus 0 (A > B) | 29 versus 355 (A < B) |
NSMAF | NM_001144772 versus NM_003580 | 17 versus 13 (A > B) | 0.11 versus 0.09 (A > B) | 25 versus 167 (A < B) |
NT5DC2 | NM_001134231 versus NM_022908 | 62 versus 0 (A > B) | 0.67 versus 0 (A > B) | 62 versus 296 (A < B) |
PPIL3 | NM_130906 versus NM_032472 | 18 versus 0 (A > B) | 0.59 versus 0 (A > B) | 61 versus 75 (A < B) |
PRKG1 | NM_006258 versus NM_001098512 | 42 versus 0 (A > B) | 0.2 versus 0 (A > B) | 44 versus 77 (A < B) |
RASA1 | NM_002890 versus NM_022650 | 176 versus 0 (A > B) | 0.45 versus 0 (A > B) | 192 versus 321 (A < B) |
RFC3 | NM_002915 versus NM_181558 | 240 versus 0 (A > B) | 2.01 versus 1.43 (A > B) | 279 versus 808 (A < B) |
RPS15 | NM_001018 versus NM_001308226 | 22 versus 0 (A > B) | 18.06 versus 0 (A > B) | 24 versus 2482 (A < B) |
CPD | NM_001304 versus NM_001199775 | 9 versus 0 (A > B) | 0.11 versus 0.52 (A < B) | 640 versus 33 (A > B) |
PPP2R2A | NM_002717 versus NM_001177591 | 12 versus 0 (A > B) | 0.44 versus 1.77 (A < B) | 859 versus 39 (A > B) |
RPL14 | NM_001034996 versus NM_003973 | 3 versus 0 (A > B) | 0.2 versus 65.57 (A < B) | 12,815 versus 83 (A > B) |
SUCLG2 | NM_003848 versus NM_001177599 | 54 versus 0 (A > B) | 0.41 versus 1.98 (A < B) | 911 versus 16 (A > B) |