Table 1 Various statistics of the datasets
Dataset | #Abstract | #Chemical | #Disease | $Chemical | $Disease | |
|---|---|---|---|---|---|---|
Weakly labeled | CDWC | 70,026 | 706,593 | 514,964 | 34,696 | 58,985 |
CDWA | 70,026 | 503,700 | 283,293 | 17,939 | 24,600 | |
CDRC (BiLSTM-CRF) | 70,026 | 770,159 | 541,235 | 40,135 | 38,715 | |
CDRA (BiLSTM-CRF) | 70,026 | 781,039 | 532,198 | 38,858 | 42,420 | |
CDRC (BioBERT-CRF) | 70,026 | 795,096 | 557,434 | 50,018 | 52,447 | |
CDRA (BioBERT-CRF) | 70,026 | 812,516 | 542,353 | 51,458 | 47,687 | |
DRC (BiLSTM-CRF) | 70,026 | – | 469,849 | – | 69,567 | |
DRA (BiLSTM-CRF) | 70,026 | – | 473,728 | – | 69,342 | |
DRC (BioBERT-CRF) | 70,026 | – | 546,515 | – | 83,436 | |
DRA (BioBERT-CRF) | 70,026 | – | 487,636 | – | 66,582 | |
Human annotated | CDR training data | 500 | 5203 | 4182 | 991 | 1384 |
CDR development data | 500 | 5347 | 4244 | 976 | 1254 | |
CDR test data | 500 | 5385 | 4424 | 1239 | 1474 | |
NCBI disease training data | 593 | – | 5145 | – | 1495 | |
NCBI disease development data | 100 | – | 787 | – | 334 | |
|  | NCBI disease test data | 100 | – | 960 | – | 382 |