Table 2 Effect of different read lengths on EM-MUL method using human, mouse and Arabidopsis simulated data sets
From: An effective method to resolve ambiguous bisulfite-treated reads
Tools | Human 76bp | Human 100bp | ||||
|---|---|---|---|---|---|---|
Recall (%) | Accuracy (%) | F1 (%) | Recall (%) | Accuracy (%) | F1 (%) | |
BWA-meth | 87.42 | 99.70 | 93.15 | 93.11 | 99.73 | 96.31 |
BatMeth2 | 87.32 | 98.57 | 92.61 | 92.79 | 98.89 | 95.74 |
GEM3 | 89.01 | 98.26 | 93.40 | 94.31 | 98.87 | 96.54 |
BISCUIT | 88.81 | 99.57 | 93.88 | 94.10 | 99.67 | 96.8 |
GSNAP | 90.45 | 97.53 | 93.86 | 94.35 | 98.22 | 96.25 |
EM-MUL | 95.16 | 97.26 | 96.20 | 97.74 | 97.88 | 97.81 |