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Table 6 The scoring matrix [17] for the positive strand and overlapping unique reads. Different types of match and mismatch scores are different

From: An effective method to resolve ambiguous bisulfite-treated reads

  A C G T N
A 6 − 18 − 18 − 18 − 25
C − 18 6 − 18 3 − 25
G − 18 − 18 6 − 18 − 25
T − 18 − 18 − 18 3 − 25
N − 25 − 25 − 25 − 25 25