Table 2 RNAdetector’s supported analysis, species, RNA types and files
From: RNAdetector: a free user-friendly stand-alone and cloud-based system for RNA-Seq data analysis
Feature | Description |
|---|---|
Input Files | FASTQ; BAM; SAM |
Supported Analysis | Quantification; Differential expression analysis; Pathway analysis |
Supported Species | Human; Mouse; C. elegans. Additional sequenced species can be analyzed by uploading their genome and\or transcriptome in FASTA format following the step-by-step procedure detailed in the user interface |
Supported RNA types | mRNAs; miRNAs; snRNAs; snoRNAs; piRNA [only for human at this moment]; tsRNAs; tUCR [only for human at this moment]; lncRNAs; circRNAs. Additional ncRNAs classes can be analyzed by uploading their genomic coordinates in GTF or BED format following the step-by-step procedure detailed in the user interface |
Output Files | Graphical final report for both Differential Expression Analysis and Pathway Analysis with summary of the results, figures, and tables. Text files with raw counts, normalized counts, differentially expressed gene and perturbated pathway can also be downloaded |