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Fig. 11 | BMC Bioinformatics

Fig. 11

From: Predicting synchronized gene coexpression patterns from fibration symmetries in gene regulatory networks in bacteria

Fig. 11

Carbon utilization circuit: correlation matrix. Correlation matrix of the fiber building blocks involved in the carbon utilization system. Colored rectangles \(A, B \dots H\) on the left code gene names that will be used in expression matrix plot Fig. 12 and structure vs function plot Fig. 13. Operons are shown with lines along the correlation matrix diagonal. Black crosses show correlation entries below 0.6 to compare low cross-correlation with high correlation inside fibers. COG categories are obtained using UniProt database [65]. Function of each block (Galactosamine, Arabinose, etc.) is defined by the type of it’s regulator obtained from RegulonDB [49]

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BMC Bioinformatics

ISSN: 1471-2105

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