Uncovering the roles of microRNAs/lncRNAs in characterising breast cancer subtypes and prognosis

BMC Bioinformatics

Table 1 A summary of the datasets

Datasets	#Features	#Patients	Data types	Platforms	Source
TCGA753	18104	753	miRNA, mRNA	Illumina Genome Analyzer miRNA Sequencing, Illumina HiSeq 2000 RNA Sequencing V2	[42]
METABRIC	25191	1283	miRNA, mRNA	Agilent ncRNA 60k, Illumina HT 12	[9]
UK	22172	207	miRNA, mRNA	Illumina Human v1 MicroRNA expression beadchip, Illumina humanRef-8 v1 expression beadchip	[43]
HEL	25946	115	miRNA, mRNA	Illumina Human v2 MicroRNA expression beadchip, Illumina HumanHT-12 V3 expression beadchip	[44, 45]
GSE19783	20085	99	miRNA, mRNA	Agilent-019118 Human miRNA Microarray 2 G4470B, Agilent-014850 Whole Human Genome Microarray 4x44K G4112F	[46]
TCGA500	31729	500	lncRNA, miRNA, mRNA	Illumina Genome Analyzer miRNA Sequencing, Illumina HiSeq 2000 RNA Sequencing V2	[42]
GSE12276	54675	204	lncRNA, mRNA	Affymetrix Human Genome U133 Plus 2	[47]
GSE19615	54675	115	lncRNA, mRNA	Affymetrix Human Genome U133 Plus 2	[48]
GSE20685	54675	88	lncRNA, mRNA	Affymetrix Human Genome U133 Plus 2	[49]
GSE20711	54675	252	lncRNA, mRNA	Affymetrix Human Genome U133 Plus 2	[50]
GSE21653	54675	77	lncRNA, mRNA	Affymetrix Human Genome U133 Plus 2	[51]
GSE42568	54675	327	lncRNA, mRNA	Affymetrix Human Genome U133 Plus 2	[52]
GSE9195	54675	77	lncRNA, mRNA	Affymetrix Human Genome U133 Plus 2	[22]
TRANSBIG	22283	198	mRNA	Affymetrix Human Genome U133A	[53]
UNT	44928	137	mRNA	Affymetrix Human Genome U133A/B	[18]
UPP	44928	251	mRNA	Affymetrix Human Genome U133A/B	[54]
MAINZ	22283	200	mRNA	Affymetrix Human Genome U133A	[55]
NKI	24481	337	mRNA	Agilent Human oligo microarrays	[16, 56]
GSE6532	44928	414	mRNA	Affymetrix Human Genome U133A/B/Plus 2	[22]

#Features number of features in the cohort, #Patients number of patients in the cohort

ISSN: 1471-2105