Fig. 3From: PPalign: optimal alignment of Potts models representing proteins with direct coupling informationOverview of evaluation procedure for a reference MSA. A reference pairwise sequence alignment is (randomly) extracted from a reference MSA in SISYPHUS. The two sequences are then aligned by PPalign with the workflow previously introduced, and the alignment is compared with the reference alignment in terms of precision, recall and \(F_1\) scoreBack to article page