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Fig. 5 | BMC Bioinformatics

Fig. 5

From: NUCOME: A comprehensive database of nucleosome organization referenced landscapes in mammalian genomes

Fig. 5

The interpretation and application example of the ‘TSS-centered Annotation’ module. a The operation and results exhibition of the ‘TSS-centered Annotation’ module. b Classification of the 47 samples into high expression level and low expression level by RPKM of the Nanog gene in mouse. c The differences in several nucleosome organization features between the two classes of samples. The p-value was calculated by the rank-sum test. d The correlation between gene expression level and nucleosome organization features. The Pearson correlation coefficient is marked above the scatter plots. The nucleosome organization features on c and d include nucleosome array scores downstream of the TSS 1 kb bin, nucleosome depletion level on the TSS, nucleosome occupancy on the TSS and linker length downstream of the TSS 1 kb bin

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