Skip to main content

Table 2 Average performance and simulation rankings of tools at identifying phage

From: Simulation study and comparative evaluation of viral contiguous sequence identification tools

Tool F1 rank Precision rank Recall rank Average F1 Average precision Average recall
VirSorter 2.10 3.10 6.40 0.636 0.640 0.658
Kraken2 2.93 1.07 7.80 0.609 0.962 0.467
Vibrant 3.52 4.10 7.26 0.560 0.573 0.598
VirFinder 3.93 2.30 9.32 0.548 0.717 0.450
DeepVirFinder 5.04 5.38 7.90 0.432 0.392 0.496
VirSorter2 5.27 5.93 3.10 0.463 0.341 0.797
Phybrid 5.40 6.00 3.60 0.413 0.317 0.755
Phybrid Proteins 7.47 7.70 4.63 0.142 0.213 0.717
MetaPhinder 8.73 8.67 2.83 0.082 0.138 0.842
Earth Virome 9.73 9.73 1.78 0.023 0.044 0.872
  1. Score of best performing tool is bolded in each column