Table 2 Average performance and simulation rankings of tools at identifying phage
From: Simulation study and comparative evaluation of viral contiguous sequence identification tools
Tool | F1 rank | Precision rank | Recall rank | Average F1 | Average precision | Average recall |
|---|---|---|---|---|---|---|
VirSorter | 2.10 | 3.10 | 6.40 | 0.636 | 0.640 | 0.658 |
Kraken2 | 2.93 | 1.07 | 7.80 | 0.609 | 0.962 | 0.467 |
Vibrant | 3.52 | 4.10 | 7.26 | 0.560 | 0.573 | 0.598 |
VirFinder | 3.93 | 2.30 | 9.32 | 0.548 | 0.717 | 0.450 |
DeepVirFinder | 5.04 | 5.38 | 7.90 | 0.432 | 0.392 | 0.496 |
VirSorter2 | 5.27 | 5.93 | 3.10 | 0.463 | 0.341 | 0.797 |
Phybrid | 5.40 | 6.00 | 3.60 | 0.413 | 0.317 | 0.755 |
Phybrid Proteins | 7.47 | 7.70 | 4.63 | 0.142 | 0.213 | 0.717 |
MetaPhinder | 8.73 | 8.67 | 2.83 | 0.082 | 0.138 | 0.842 |
Earth Virome | 9.73 | 9.73 | 1.78 | 0.023 | 0.044 | 0.872 |