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Table 1 Input.csv file for the TransAT package

From: Transcript annotation tool (TransAT): an R package for retrieving annotations for transcript-specific genetic variants

(a)

Transcript_version

Nucleotide_changes

NM_005359

A947G

NM_000059

C3109T

NM_000059

A4599C

(b)

Chr

Start

End

Ref

Alt

18

48,586,278

48,586,278

A

G

13

32,911,601

32,911,601

C

T

13

32,913,091

32,913,091

A

C

  1. The input format into the TransAT package for (a) Function: convert_transcriptID(), which converts transcripts to variants and maps them to genomic positions, and (b) Function: pop_freq(), which provides allele frequencies from global populations and gene-based annotations
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BMC Bioinformatics

ISSN: 1471-2105

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