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Table 2 Number of CNV calls by subject and algorithm for the ‘WGS’ pool

From: Pre-capture multiplexing provides additional power to detect copy number variation in exome sequencing

Subject Total Duplications Deletions
MC ED WG MC ED WG MC ED WG
NCG_00012 90 106 143 61 73 121 29 33 22
NCG_00237 82 101 165 50 64 129 32 37 36
NCG_00525 68 74 151 30 33 110 38 41 41
NCG_00593 45 58 142 22 28 81 23 30 61
NCG_00676 66 78 112 38 46 92 28 32 20
NCG_00790 5156 2204 121 19 37 92 5137 2167 29
NCG_00819 68 76 134 30 41 100 38 35 34
NCG_00840 78 92 157 44 52 115 34 40 42
NCG_00851 1151 859 141 28 51 102 1123 808 39
NCG_00857 59 75 119 10 15 81 49 60 38
NCG_00976 46 58 114 25 37 93 21 21 21
NCG_01023 59 95 143 32 60 113 27 35 30
NCG_01043 73 94 128 40 64 105 33 30 23
NCG_01076 36 57 105 7 22 78 29 35 27
NCG_01077 135 157 230 103 121 184 32 36 46
NCG_01117 95 101 154 72 78 129 23 23 25
  1. ‘MC’ indicates the mcCNV algorithm; ‘ED’ indicates the ExomeDepth algorithm; ‘WG’ indicates the overlap of ERDS/cnvpytor calls from matched whole-genome sequencing. Exons with any overlap of the repetitive and low-complexity regions, as defined in the Trost et al. manuscript, omitted from analysis