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Table 7 Performance comparison of BERT-CRF and BERT-Softmax

From: Deep learning with language models improves named entity recognition for PharmaCoNER

Method

Mean ± SD

Max

P (%)

R (%)

F1 (%)

P (%)

R (%)

F1 (%)

BERT-CRF

90.42 ± 1.16

89.59 ± 0.36

90.00 ± 0.68

91.69

89.90

90.79

BERT-Softmax

91.40 ± 0.81

90.90 ± 0.47

91.15 ± 0.60

92.44

91.59

92.01

  1. ‘BERT’ refers to BioBERTv1.1(+P,Cased)
  2. The highest values are shown in bold