Fig. 1
From: SPLICE-q: a Python tool for genome-wide quantification of splicing efficiency
Read assignment scheme for splicing efficiency (SE) and inverse intron expression ratio (IER). Illustration of the reads used by SPLICE-q to quantify SE and IER. In yellow, split reads at the 5’ splice junction; in orange, split reads at the 3’ splice junction; in green, unsplit reads at the 5’ splice junction; in dark blue, unsplit reads at the 3’ splice junction. In gray and blue, the areas covering the exons and introns, respectively. In white, reads not overlapping splice junctions