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Table 11 The intersection of the first 10 pathways (sorted by the relevance of p value \(\le 0.005\)) obtained from BiP performing PEA using CC genes lists and the Reactome database

From: Using BioPAX-Parser (BiP) to enrich lists of genes or proteins with pathway data

Pathway Name

p value

FDRc

Bc

(1) Metabolism of proteins

2.32 × 10\(^{-63}\)

4.66 × 10\(^{-60}\)

4.66 × 10\(^{-60}\)

(2) Post-translational protein modification

2.13 × 10\(^{-49}\)

2.14 × 10\(^{-46}\)

4.29 × 10\(^{-46}\)

(3) Cellular responses to external stimuli

5.70 × 10\(^{-35}\)

3.82 × 10\(^{-32}\)

1.14 × 10\(^{-31}\)

(4) Cell Cycle, Mitotic

1.90 × 10\(^{-33}\)

9.57 × 10\(^{-31}\)

3.83 × 10\(^{-30}\)

(5) Mitotic G1-G1/S phases

1.90 × 10\(^{-33}\)

7.65 × 10\(^{-31}\)

3.83 × 10\(^{-30}\)

(6) Cellular responses to stress

1.98 × 10\(^{-33}\)

6.63 × 10\(^{-31}\)

3.98 × 10\(^{-30}\)

(7) Cell Cycle

3.03 × 10\(^{-33}\)

8.71 × 10\(^{-31}\)

6.10 × 10\(^{-30}\)

(8) Mitotic G2-G2/M phases

9.07 × 10\(^{-32}\)

2.28 × 10\(^{-29}\)

1.82 × 10\(^{-28}\)

(9) DNA Repair

6.35 × 10\(^{-31}\)

1.42 × 10\(^{-28}\)

1.28 × 10\(^{-27}\)

(10) Cell Cycle Checkpoints

6.55 × 10\(^{-31}\)

1.32 × 10\(^{-28}\)

1.32 × 10\(^{-27}\)

  1. In the table, FDRc represents the corrected p value using FDR corrector, and Bc refers to the corrected p value using Bonferroni corrector