Table 14 The intersection of the first 7 pathways (sorted by the relevance of p value \(\le 0.005\)) obtained from pathDIP performing PEA using EC genes lists and the Reactome database
From: Using BioPAX-Parser (BiP) to enrich lists of genes or proteins with pathway data
Pathway Name | p value | FDRc | Bc |
|---|---|---|---|
(1) RNA Polymerase II Transcription | 5.04 × 10\(^{-11}\) | 7.43 × 10\(^{-09}\) | 5.94 × 10\(^{-08}\) |
(2) Gene expression (Transcription) | 6.83 × 10\(^{-11}\) | 8.95 × 10\(^{-09}\) | 8.06 × 10\(^{-08}\) |
(3) Generic Transcription Pathway | 1.67 × 10\(^{-10}\) | 1.51 × 10\(^{-08}\) | 1.97 × 10\(^{-07}\) |
(4) Metabolism of proteins | 6.64 × 10\(^{-07}\) | 2.70 × 10\(^{-05}\) | 7.83 × 10\(^{-04}\) |
(5) Immune System | 6.85 × 10\(^{-06}\) | 2.07 × 10\(^{-04}\) | 8.09 × 10\(^{-03}\) |
(6) Innate Immune System | 4.79 × 10\(^{-03}\) | 3.25 × 10\(^{-02}\) | 1.00\(\times 10^{+00}\) |
(7) Translation | 7.01 × 10\(^{-03}\) | 4.31 × 10\(^{-02}\) | 1.00\(\times 10^{+00}\) |