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Table 2 The intersection of the first 10 pathways (sorted by the relevance of p value \(\le 0.005\)) obtained from BiP by performing PEA using CC gene lists and the KEGG database

From: Using BioPAX-Parser (BiP) to enrich lists of genes or proteins with pathway data

Pathway Name

p value

FDRc

Bc

(1) Metabolic pathways

4.33 × 10\(^{-152}\)

1.26 × 10\(^{-149}\)

1.26 × 10\(^{-149}\)

(2) Pathways in cancer

2.95 × 10\(^{-36}\)

2.14 × 10\(^{-34}\)

8.58 × 10\(^{-34}\)

(3) Transcriptional misregulation in cancer

2.44 × 10\(^{-28}\)

1.18 × 10\(10^{-26}\)

7.10 × 10\(^{-26}\)

(4) MAPK signaling pathway

2.04 × 10\(^{-27}\)

8.50 × 10\(^{-26}\)

5.95 × 10\(^{-25}\)

(5) Salmonella infection

2.75 × 10\(^{-25}\)

8.90 × 10\(^{-24}\)

8.01 × 10\(^{-23}\)

(6) Neuroactive ligand-receptor interaction

1.00 × 10\(^{-24}\)

2.65 × 10\(^{-23}\)

2.91 × 10\(^{-22}\)

(7) Herpes simplex virus 1 infection

1.85 × 10\(^{-21}\)

3.85 × 10\(^{-20}\)

5.39 × 10\(^{-19}\)

(8) Proteoglycans in cancer

3.08 × 10\(^{-21}\)

5.60 × 10\(^{-20}\)

8.95 × 10\(^{-19}\)

(9) Epstein-Barr virus infection

5.75 × 10\(^{-21}\)

9.29 × 10\(^{-20}\)

1.67 × 10\(^{-18}\)

(10) Human papillomavirus infection

1.48 × 10\(^{-20}\)

2.06 × 10\(^{-19}\)

4.32 × 10\(^{-18}\)

  1. In the table, FDRc represents the corrected p value using FDR corrector, and Bc refers to the corrected p value using Bonferroni corrector