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Table 6 The results for three dimension reduction techniques for 964 side effects

From: A neural network-based method for polypharmacy side effects prediction

Dimension reduction techniques TP FP TN FN AUROC AUPRC Precision Recall F-score ACC MCC
PCA 105,153 12,013 95,955 2608 0.966 0.953 0.901 0.976 0.936 0.934 0.872
Low variance filter 104,830 12,667 95,119 3113 0.963 0.952 0.899 0.972 0.933 0.931 0.866
Autoencoder 104,498 13,087 94,827 3317 0.963 0.950 0.897 0.971 0.931 0.929 0.862
  1. Bold numbers show the best performance for each criteria