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Table 2 Benchmark for 1000 new plasmids of RefSeq200 dataset for the most abundant bacterial orders

From: COPLA, a taxonomic classifier of plasmids

Outcome Enterobacterales Lactobacillales Bacillales All samples
PTU assigned     
 Cases 259 (63%) 40 (46%) 25 (30%) 408 (41%)
 Score [0.98 ± 0.06] [0.94 ± 0.11] [0.96 ± 0.1] [0.97 ± 0.08]
New PTU     
 Cases 19 (5%) 6 (7%) 2 (2%) 41 (4%)
 Score [0.84 ± 0.22] [0.89 ± 0.17] [0.75 ± 0.35] [0.83 ± 0.24]
Not assigned     
 Cases 131 (32%) 41 (47%) 55 (67%) 551 (55%)
 Score [0.99 ± 0.05] [1 ± 0.01] [1 ± 0.0] [1 ± 0.05]
  1. Number of cases (and percentage) for each prediction outcome. Mean and standard deviation of the prediction scores for each outcome class are additionally provided (in square brackets). More detailed results in Additional file 4