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Table 2 Benchmark for 1000 new plasmids of RefSeq200 dataset for the most abundant bacterial orders

From: COPLA, a taxonomic classifier of plasmids

Outcome

Enterobacterales

Lactobacillales

Bacillales

All samples

PTU assigned

    

 Cases

259 (63%)

40 (46%)

25 (30%)

408 (41%)

 Score

[0.98 ± 0.06]

[0.94 ± 0.11]

[0.96 ± 0.1]

[0.97 ± 0.08]

New PTU

    

 Cases

19 (5%)

6 (7%)

2 (2%)

41 (4%)

 Score

[0.84 ± 0.22]

[0.89 ± 0.17]

[0.75 ± 0.35]

[0.83 ± 0.24]

Not assigned

    

 Cases

131 (32%)

41 (47%)

55 (67%)

551 (55%)

 Score

[0.99 ± 0.05]

[1 ± 0.01]

[1 ± 0.0]

[1 ± 0.05]

  1. Number of cases (and percentage) for each prediction outcome. Mean and standard deviation of the prediction scores for each outcome class are additionally provided (in square brackets). More detailed results in Additional file 4