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Fig. 3 | BMC Bioinformatics

Fig. 3

From: Matisse: a MATLAB-based analysis toolbox for in situ sequencing expression maps

Fig. 3

Probabilistic cell typing of individual cells in a mouse coronal section. A Map of the most probable cell type predicted for each cell segmented in the mouse coronal section analyzed. Cells have been classified in 14 different major classes defined by Zeisel et al. [29] based on the expression levels of all the genes analyzed in the ISS experiment. B Heat map representing the mean expression of each gene for the cells assigned to each specific class by probabilistic cell typing (pciSeq) normalized the total expression of each gene. Differentially enriched genes are found for each of the cell classed identified. C Relative distribution of the classes assigned on A for each of the domains defined in Fig. 2E. Domain colors correspond to the colors used in Fig. 2E to visualize the domain on each class and cell class colors correspond to the ones used in A to represent the most probable cell class assigned to each cell

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