From: A pipeline for RNA-seq based eQTL analysis with automated quality control procedures
Summary | Threshods | ROSMAP | Mayo | MSBB | CommonMind |
---|---|---|---|---|---|
Effective sample size | NA | 334 | 103 | 65 | 200 |
Gene count | NA | 26,663 | 27,101 | 29,736 | 21,511 |
Variant count | NA | 6,736,714 | 6,932,711 | 6,937,313 | 6,703,202 |
Top PC count | NA | 3 | 3 | 3 | 3 |
Cis-eQTL associations | \(P<1\) | 124,877,625 | 131,696,349 | 143,560,218 | 103,667,853 |
Trans-eQTL associations | \(P<10^{-4}\) | 18,617,087 | 19,594,408 | 21,324,856 | 14,353,808 |
Cis-eQTL associations | \(FDR<0.05\) | 3,132,119 | 516,977 | 124,675 | 404,182 |
Cis-eQTL count | \(FDR<0.05\) | 1,515,726 | 326,652 | 78,690 | 306,100 |
Cis-gene count | \(FDR<0.05\) | 21,173 | 7999 | 3373 | 6021 |
Trans-eQTL associations | \(FDR<0.05\) | 163,821 | 23,200 | 13,000 | 9151 |
Trans-eQTL count | \(FDR<0.05\) | 78,894 | 13,607 | 6454 | 8914 |
Trans-gene count | \(FDR<0.05\) | 3079 | 745 | 394 | 203 |