From: Modelling the bioinformatics tertiary analysis research process
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1 | Research Question Definition | X | X | X | X | X | X | X | X | X | X | X | X | X | X | X |
2 | State of the Art Analysis | X | X | X | X | X | X | X | X | X | X | X | X | X | X | X |
3 | Deliverable Definition | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
4 | Public Available Data Research | X | X | X | X | X | X | X | X | X | X | X | X | X | X | X |
5 | Dataset Selection | X | X | X | X | X | X | X | X | X | X | X | X | X | X | X |
6 | Literature Research on the Data | X | X | X | X | X | X | X | X | X | X | X | X | X | X | X |
7 | Data Assessment | X | X | X | X | X | X | X | X | X | X | X | X | X | X | X |
8 | Data Format Check | X | X | X | X | X | X | X | X | X | X | X | X | X | X | X |
9 | Quality Assessment | X | Â | X | X | Â | Â | X | Â | Â | Â | Â | Â | Â | Â | X |
10 | Bad Data Discard | X | Â | X | X | X | Â | X | X | Â | X | Â | Â | X | Â | Â |
11 | Missing Data Imputation | Â | Â | X | Â | Â | Â | X | Â | Â | Â | Â | Â | Â | Â | Â |
12 | Trimming | X | Â | X | X | X | Â | Â | X | Â | Â | Â | X | X | Â | Â |
13 | Metrics and Normalization Methods Identification | X | Â | Â | X | Â | Â | Â | X | Â | X | Â | Â | Â | Â | Â |
14 | Values Normalization | X | Â | Â | X | Â | Â | Â | X | Â | X | Â | Â | Â | Â | Â |
15 | Visualization Method Identification | X | Â | Â | X | Â | X | Â | X | Â | Â | X | X | Â | Â | Â |
16 | Visualization Creation | X | Â | Â | X | Â | X | Â | X | Â | Â | X | X | Â | Â | Â |
17 | Literature Research on Integration Methods | Â | X | Â | Â | Â | Â | Â | X | X | Â | Â | Â | Â | Â | Â |
18 | Integration Method Identification | Â | X | Â | Â | Â | Â | Â | X | X | Â | Â | Â | Â | Â | Â |
19 | Integration Method Application | Â | X | Â | Â | Â | Â | Â | X | X | Â | Â | Â | Â | Â | Â |
20 | Literature Research on the Algorithms | X | X | X | X | X | X | X | X | X | X | X | X | X | X | X |
21 | Preliminary Analysis on Data and Algorithms | X | X | X | X | X | X | X | X | X | X | X | X | X | X | X |
22 | Algorithm Implementation | X | X | X | X | X | X | X | X | X | X | X | X | X | X | X |
23 | Data Adaptation to the Algorithm | X | X | X | X | X | X | X | X | Â | Â | Â | X | X | X | X |
24 | Data Split in Training and Testing Set | X | Â | X | Â | Â | X | Â | Â | Â | Â | X | X | X | X | X |
25 | Hyperparameter and Parameter Tuning | X | Â | X | Â | Â | X | X | Â | Â | X | X | Â | X | X | Â |
26 | Algorithm Parameters Check | X | Â | X | Â | X | X | X | Â | Â | X | X | Â | X | X | Â |
27 | Optimization | Â | X | X | Â | X | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
28 | Visualization Method Identification | X | Â | Â | X | X | Â | X | X | Â | X | Â | X | X | X | X |
29 | Visualization Creation | X | Â | Â | X | X | Â | X | X | Â | X | Â | X | X | X | X |
30 | Performance Evaluation | X | X | X | X | X | X | Â | Â | X | X | X | X | X | X | X |
31 | Robustness Evaluation | Â | Â | Â | X | Â | Â | X | Â | Â | Â | Â | Â | Â | Â | Â |
32 | Comparative Analysis | Â | X | X | Â | Â | X | X | X | X | X | Â | Â | Â | Â | Â |
33 | Testing | Â | Â | Â | Â | Â | X | Â | Â | Â | Â | X | X | Â | Â | Â |
34 | Enrichment Analysis | Â | Â | X | X | X | Â | Â | X | Â | Â | Â | Â | Â | Â | Â |
35 | Literature Research on Biological Domain | X | X | X | X | Â | Â | X | X | Â | Â | Â | Â | Â | Â | Â |
36 | Relevant Feature Extraction | X | Â | Â | Â | Â | Â | Â | Â | X | X | Â | Â | Â | Â | Â |