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Table 14 SNV results for HG001 WGS, Illumina

From: HELLO: improved neural network architectures and methodologies for small variant calling

 

GATK

DeepVariant

HELLO

Precision

Recall

Errors

Precision

Recall

Errors

Precision

Recall

Errors

20x

0.996457

0.994914

26,242

0.997263

0.996855

17,898

0.998376

0.997280

13,217

30x

0.997000

0.999002

12,188

0.998809

0.999297

5767

0.999292

0.999378

4048

  1. Values in bold indicate the best operating point for each tool for the corresponding metric
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BMC Bioinformatics

ISSN: 1471-2105

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