BMC Bioinformatics

Table 15 Indel results for HG001 WGS, PacBio

From: HELLO: improved neural network architectures and methodologies for small variant calling

	GATK			DeepVariant			HELLO
	Precision	Recall	Errors	Precision	Recall	Errors	Precision	Recall	Errors
15x	0.882206	0.848058	134,865	0.951037	0.938379	55,902	0.964688	0.950110	42,985
30x	0.917539	0.887374	97,949	0.979646	0.980324	20,445	0.987364	0.986196	13,466

Values in bold indicate the best operating point for each tool for the corresponding metric

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