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Table 15 Indel results for HG001 WGS, PacBio

From: HELLO: improved neural network architectures and methodologies for small variant calling

  GATK DeepVariant HELLO
Precision Recall Errors Precision Recall Errors Precision Recall Errors
15x 0.882206 0.848058 134,865 0.951037 0.938379 55,902 0.964688 0.950110 42,985
30x 0.917539 0.887374 97,949 0.979646 0.980324 20,445 0.987364 0.986196 13,466
  1. Values in bold indicate the best operating point for each tool for the corresponding metric