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Table 17 Indel results for HG001 WGS, Hybrid

From: HELLO: improved neural network architectures and methodologies for small variant calling

  DeepVariant HELLO
Precision Recall Errors Precision Recall Errors
20 × 15x 0.984914 0.986604 14,582 0.990969 0.991731 8840
20 × 30x 0.986462 0.990168 12,013 0.993106 0.994709 6242
30 × 15x 0.990535 0.992549 8676 0.993668 0.995411 5598
30 × 30x 0.990507 0.993720 8114 0.994388 0.996606 4627
  1. Values in bold indicate the best operating point for each tool for the corresponding metric