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Table 19 HELLO without indel realignment: results for HG003 chr21-22

From: HELLO: improved neural network architectures and methodologies for small variant calling

  DeepVariant HELLO
Precision Recall Errors Precision Recall Errors
a. Illumina indel
30x 0.990523 0.983499 361 0.992667 0.981609 356
b. Illumina SNV
30x 0.994724 0.992616 1088 0.997012 0.992349 914
c. Hybrid indel
20 × 15x 0.988237 0.989823 308 0.991680 0.989096 268
d. Hybrid SNV
20 × 15x 0.998732 0.997512 323 0.998581 0.997442 342