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Table 4 SNV results for HG003 WGS, PacBio

From: HELLO: improved neural network architectures and methodologies for small variant calling

 

GATK

DeepVariant

HELLO

Precision

Recall

Errors

Precision

Recall

Errors

Precision

Recall

Errors

15x

0.996702

0.990138

43,719

0.998137

0.994880

23,218

0.998536

0.995063

21,286

30x

0.997521

0.995412

23,501

0.999092

0.998774

7101

0.999470

0.998794

5776

60x

0.997561

0.995716

22,357

0.999405

0.998650

6471

0.999636

0.998794

5223

  1. Values in bold indicate the best operating point for each tool for the corresponding metric
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BMC Bioinformatics

ISSN: 1471-2105

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