BMC Bioinformatics

Table 7 Indel results for HG003 chr21-22, Illumina

From: HELLO: improved neural network architectures and methodologies for small variant calling

	GATK			DeepVariant			HELLO
	Precision	Recall	Errors	Precision	Recall	Errors	Precision	Recall	Errors
20x	0.974686	0.953333	993	0.978402	0.966126	769	0.985003	0.968089	648
30x	0.987363	0.977466	488	0.990523	0.983499	361	0.993741	0.983717	312
40x	0.989344	0.983863	373	0.994353	0.988878	233	0.995318	0.987425	239
50x	0.991753	0.986843	298	0.995205	0.990332	201	0.996740	0.989460	191

Values in bold indicate the best operating point for each tool for the corresponding metric

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