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Table 9 Indel results for HG003 chr21-22, PacBio

From: HELLO: improved neural network architectures and methodologies for small variant calling

  GATK DeepVariant HELLO
Precision Recall Errors Precision Recall Errors Precision Recall Errors
15x 0.862101 0.857818 3903 0.943052 0.937196 1666 0.964158 0.950716 1179
30x 0.902858 0.895181 2812 0.977656 0.979065 606 0.989340 0.986043 343
60x 0.909926 0.904776 2585 0.990084 0.989460 286 0.996480 0.994912 120
  1. Values in bold indicate the best operating point for each tool for the corresponding metric