From: HELLO: improved neural network architectures and methodologies for small variant calling
 | GATK | DeepVariant | HELLO | ||||||
---|---|---|---|---|---|---|---|---|---|
Precision | Recall | Errors | Precision | Recall | Errors | Precision | Recall | Errors | |
15x | 0.862101 | 0.857818 | 3903 | 0.943052 | 0.937196 | 1666 | 0.964158 | 0.950716 | 1179 |
30x | 0.902858 | 0.895181 | 2812 | 0.977656 | 0.979065 | 606 | 0.989340 | 0.986043 | 343 |
60x | 0.909926 | 0.904776 | 2585 | 0.990084 | 0.989460 | 286 | 0.996480 | 0.994912 | 120 |