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Fig. 4 | BMC Bioinformatics

Fig. 4

From: CoSTA: unsupervised convolutional neural network learning for spatial transcriptomics analysis

Fig. 4

Collective expression patterns detected by different methods in Slide-seq data. A Average expression patterns of Vim, Gfap, Ctsd and their correlated genes after 2 weeks brain injury defined by different methods. B Average expression patterns of Vim, Gfap, Ctsd correlated genes detected by CoSTA and not by the indicated methods. C Average expression patterns of Vim, Gfap, Ctsd correlated genes detected by other methods and not CoSTA. D Gene clusters of CoSTA SE genes at 2-week time point on 2 UMAP dimensions. Mean expression patterns are presented for selected clusters. Visualization with raw count values that are scaled from 0 to 1

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