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Fig. 1 | BMC Bioinformatics

Fig. 1

From: Immunopeptidomics toolkit library (IPTK): a python-based modular toolbox for analyzing immunopeptidomics data

Fig. 1

An overview of the IPTK library structure and design. A A high-level view of its different modules and how they interact with each other. B An overview of the Classes module and its hierarchy. ExperimentSet represents the highest level of abstraction in the module, each ExperimentSet is a collection of experiments, donated by Exp.1 to Exp. n, each of which composites mainly of; Proband, HLASet, Tissue and Peptides. C The API of the Tissue class where EP is the expression profile, CL is cellular location and Aux. is the auxiliary gene expression and protein localization, respectively. D The IPTK abstraction of the mapping between peptides and proteins as acyclic unidirectional graph

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