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Fig. 8 | BMC Bioinformatics

Fig. 8

From: Immunopeptidomics toolkit library (IPTK): a python-based modular toolbox for analyzing immunopeptidomics data

Fig. 8

A coverage and annotation plot for Apolipoprotein B-100, UniProt ID: P04114. The coverage track shows the number of peptides obtained from the HLA-DR immunopeptidome of total PBMC using 1 × 108 cells as a starting material. Protein information was obtained from Uniprot database on 5th of December 2020. The chain track shows the location of polypeptide chains in the protein. The “Domain track” shows the position of known domains in the protein backbone. The “Sequence variants track” shows the position of known variants in the protein. The “Glycosylation track” shows the position of the known glycosylation in the protein, while the “Modifications track” shows the position of any known post-translational modification (PTM) in the protein

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