From: Ribovore: ribosomal RNA sequence analysis for GenBank submissions and database curation
Argument index | Argument name | Description |
---|---|---|
1 | Min_length | Lower bound on sequence length |
2 | Max_length | Upper bound on sequence length |
3 | Seq_file | Input sequence file in FASTA format |
4 | Output_file_name | Name for summary output file |
5 | Min_id_percentage | Lower bound on percent identity |
6 | Max_Evalue | Upper bound on E-value |
7 | Nprocessors | Number of threads for blastn |
8 | Output_dir | Output directory path |
9 | Blastdb | Blastn database |