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Table 2 Command-line arguments for rRNA_sensor

From: Ribovore: ribosomal RNA sequence analysis for GenBank submissions and database curation

Argument index

Argument name

Description

1

Min_length

Lower bound on sequence length

2

Max_length

Upper bound on sequence length

3

Seq_file

Input sequence file in FASTA format

4

Output_file_name

Name for summary output file

5

Min_id_percentage

Lower bound on percent identity

6

Max_Evalue

Upper bound on E-value

7

Nprocessors

Number of threads for blastn

8

Output_dir

Output directory path

9

Blastdb

Blastn database