From: Ribovore: ribosomal RNA sequence analysis for GenBank submissions and database curation
Unexpected feature name | Description |
---|---|
NoHits* | No stage 1 hits above threshold to any models |
UnacceptableModel* | Best stage 1 hit is to a model that is unacceptable as defined in --inaccept input file |
MultipleFamilies* | Stage 1 hits exist to more than one family (e.g. SSU and LSU) |
BothStrands* | Stage 1 hits above threshold exist on both strands |
DuplicateRegion* | At least two stage 1 or 2 hits on same strand overlap |
InconsistentHits* | Not all hits are in the same order in sequence and model coordinates |
QuestionableModel* | Best stage 1 hit is to a model that is questionable as defined in --inaccept input file |
MinusStrand | Best stage 1 hit is on the minus strand |
LowScore | The bits per nucleotide value (total bit score divided by total length of sequence) is below threshold of 0.50 |
LowCoverage | Sequence coverage of all hits is below threshold of 0.86 |
LowScoreDifference | Difference between top two models in different domains is below 0.10 bits per position |
VeryLowScoreDifference | Difference between top two models in different domains is below 0.04 bits per position |
MultipleHits | There is more than one hit to the best scoring model on the same strand |
EvalueScoreDiscrepancy | If hits were sorted by E-value due to --evalue, best hit has lower bit score than second best hit |
TooShort* | Sequence length is less than <n> and --shortfail <n> used |
TooLong* | Sequence length is greater than <n> and --shortlong <n> used |