Fig. 2
From: Classification of protein–protein association rates based on biophysical informatics
The outputs from the kinetic Monte-Carlo simulations. For each complex, a large number of simulation trajectories were generated under ten different values of distance cutoff. The plot (a) shows the relations between distance cutoff and association probabilities for four selected systems. They are E9 DNase domain of Colicin Endonucleases in complex with immunity protein Im9 (b); human acetylcholinesterase in complex with the snake-venom toxin fasciculin-II (c); human prolactin receptor antagonist H27A in complex with the extracellular domain of the human prolactin receptor (d); and the HLA class I histocompatibility antigen in complex with β-2 microglobulin (e). Their PDB identities and experimentally measured association rates are listed in the bottom