SNPxE: SNP-environment interaction pattern identifier

BMC Bioinformatics

Table 2 SNP-environment results of an example using the SNPxE approach

SNP	Environment¹	maj/min	MAF	SNP Mode	p_SNPiv²	Interaction Pattern	p_int
SNP1	Env_g3	G/A	0.210	Dom	0.348	Int_RE_oo	0.035
SNP2	Env_g3	A/G	0.071	Rec	0.576	Int_AE_oo	0.006
SNP3	Env_g3	A/G	0.343	Rec	0.0005	Int_RE_or	0.0001
SNP4	Env_g3	A/G	0.342	Dom	0.541	Int_RE_or	0.100
SNP5	Env_g3	G/A	0.445	Add	0.015	Int_RE_ro	0.023

ISSN: 1471-2105