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Table 1 Reference bacterial genomes selected for this study

From: DELEAT: gene essentiality prediction and deletion design for bacterial genome reduction

Organism

DEG id

RefSeq

Acinetobacter baumannii ATCC 17978

DEG1043

NC_009085

Acinetobacter baylyi ADP1

DEG1013

NC_005966

Agrobacterium fabrum str. C58

DEG1045

NC_003062

Bacillus subtilis 168

DEG1001

NC_000964

Bacteroides fragilis 638R

DEG1034

NC_016776

Bacteroides thetaiotaomicron VPI-5482

DEG1023

NC_004663

Brevundimonas subvibrioides ATCC 15264

DEG1046

NC_014375

Burkholderia pseudomallei K96243

DEG1035

NC_006350; NC_006351

Burkholderia thailandensis E264

DEG1024

NC_007650; NC_007651

Campylobacter jejuni subsp. jejuni 81-176

DEG1050

NC_008787

Caulobacter crescentus

DEG1020

NC_011916

Escherichia coli MG1655 II

DEG1019

NC_000913

Francisella novicida U112

DEG1012

NC_008601

Haemophilus influenzae Rd KW20

DEG1005

NC_000907

Helicobacter pylori 26695

DEG1008

NC_000915

Mycobacterium tuberculosis H37Rv III

DEG1027

NC_000962

Mycoplasma genitalium G37

DEG1006

NC_000908

Mycoplasma pulmonis UAB CTIP

DEG1014

NC_002771

Porphyromonas gingivalis ATCC 33277

DEG1039

NC_010729

Pseudomonas aeruginosa PAO1

DEG1036

NC_002516

Rhodopseudomonas palustris CGA009

DEG1041

NC_005296

Salmonella enterica serovar Typhi Ty2

DEG1033

NC_004631

Salmonella enterica serovar Typhimurium SL1344

DEG1032

NC_016810

Sphingomonas wittichii RW1

DEG1028

NC_009511

Staphylococcus aureus NCTC 8325

DEG1017

NC_007795

Streptococcus agalactiae A909

DEG1042

NC_007432

Streptococcus pyogenes NZ131

DEG1038

NC_011375

Streptococcus sanguinis

DEG1021

NC_009009

Synechococcus elongatus PCC 7942

DEG1040

NC_007604

Vibrio cholerae N16961

DEG1003

NC_002505; NC_002506