Fig. 9
From: RPocket: an intuitive database of RNA pocket topology information with RNA-ligand data resources
The RMSD values for predicted 3D structures for the tested RNAs. The 3D structures are generated by 3dRNA, RNAcomposer, simRNA, and Vfold3D. We divided the prediction structures into Tandem loops with the Same pocket topology (TS) and Tandem loops with Different pocket topologies (TD). The red dots indicate structures with TS characteristics. These structures (red dots) generally achieve lower RMSD values than the predicted structures with TD characteristics (blue dots)