Table 1 The performance of ARCHes and RFMix on various test sets
From: Ancestry inference using reference labeled clusters of haplotypes
Test set group | Test set | Global concordance, average over test sets (proportion of test sets with superior performance) | Local concordance, average over test sets (proportion of test sets with superior performance) | ||
|---|---|---|---|---|---|
ARCHes | RFMix | ARCHes | RFMix | ||
1000 Genomes and HGDP | Single-Origin Testset Examples | 66.1% (13/15) | 43.5% (2/15) | 66.1% (13/15) | 43.5% (2/15) |
Simulated admixture | 45% Native American, 50% European, 5% African | 72.3% (1/1) | 65.7% (0/1) | 47.8% (1/1) | 18.5% (0/1) |
Simulated admixture from 16 Pairs of neighboring regions | 50%-50% admixed (2 simulation founders) | 60.1% (11/16) | 48.9% (5/16) | 58.8% (14/16) | 41.8% (2/16) |
Approx. 25%-75% Admixed (4) | 63.6% (13/16) | 51.8% (3/16) | 60.1% (14/16) | 44.7% (2/16) | |
Approx. 12.5%-87.5% Admixed (8) | 65.2% (13/16) | 51.2% (3/16) | 62.6% (14/16) | 46.0% (2/16) | |
Approx. 6.25%-93.75% Admixed (16) | 66.2% (14/16) | 50.0% (2/16) | 64.5% (14/16) | 47.0% (2/16) | |