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Fig. 5 | BMC Bioinformatics

Fig. 5

From: An integrated strategy for target SSR genotyping with toleration of nucleotide variations in the SSRs and flanking regions

Fig. 5

Allele variants for each locus of three example samples detected by AMGT-TS. To evaluate the AMGT-TS tool, an example for analyzing the three samples with a genetic relationship is given and a total of 50 loci is selected to verify the genetic relationship. The three samples are Jingke968 and its parents Jing724 (female parent) and Jing 92 (male parent). To visually observe the genetic compatibility, panels (A) and (B) refer to the first and second allele results of the 50 loci, respectively. In the figure, the abscissa shows the 50 loci; the longitudinal coordinates are the length of the genotyping fragment (bp) of each sample. The 50 loci are 100% following the genetic relationship, indicating that the AMGT-TS analysis results are accurate

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