Table 2 Median (interquartile range, IQR) probability of finding at least once 13-mer motifs (top-frequent among beta-lactamase resistance genes) in the MEGARes database over different bacterial species characterized by heterogeneous GC content
From: Fast and exact quantification of motif occurrences in biological sequences
Species | Genome length | GC content | Median (IQR) probability |
|---|---|---|---|
Nocardioides Salarius | 4,429,322 | 0.73 | 0.98 (0.94–1) |
Enhydrobacter aerosaccus | 6,767,089 | 0.65 | 0.93 (0.87–0.98) |
Paraburkholderia ginsengisol | 6,541,884 | 0.64 | 0.93 (0.87–0.97) |
Neisseria shayeganii | 2,419,744 | 0.58 | 0.97 (0.95–0.98) |
Stomatobaculum longum | 2,308,581 | 0.55 | 0.97 (0.96–0.98) |
Kluyvera intermedia | 4,938,529 | 0.52 | 0.93 (0.92–0.94) |
Buttiauxella noackiae | 4,766,673 | 0.49 | 0.93 (0.93–0.93) |
Megasphaera micronuciformis | 1,765,374 | 0.45 | 0.97 (0.97–0.98) |
Oribacterium sinus | 2,727,518 | 0.43 | 0.96 (0.95–0.98) |
Prevotella jejuni | 3,913,006 | 0.42 | 0.95 (0.92–0.97) |
Prevotella melaninogenica | 3,168,282 | 0.4 | 0.96 (0.94–0.98) |
Streptococcus pseudopneumoniae | 2,195,458 | 0.4 | 0.97 (0.95–0.99) |
Veillonella rogosae | 2,187,106 | 0.39 | 0.97 (0.95–0.99) |
Lachnoanaerobaculum orale | 2,799,073 | 0.38 | 0.97 (0.94–0.99) |
Catonella morbi | 3,477,404 | 0.38 | 0.96 (0.93–0.99) |
Staphylococcus argenteus | 2,753,898 | 0.32 | 0.98 (0.95–0.99) |
Leptotrichia wadei | 2,337,418 | 0.29 | 0.98 (0.96–1) |
Fusobacterium nucleatum | 2,455,060 | 0.26 | 0.99 (0.97–1) |