From: A targeted solution for estimating the cell-type composition of bulk samples
Method | MuSiC | OLS | ||
---|---|---|---|---|
Number of included amplicons | ||||
Total | 17 | 18 | 17 | 18 |
CD3 | 4 | 5 | 4 | 5 |
CD14 | 7 | 7 | 7 | 7 |
CD15 | 3 | 3 | 3 | 3 |
CD19 | 3 | 3 | 3 | 3 |
Correlation with true proportion | ||||
CD3 | 0.990 | 0.971 | 0.986 | 0.954 |
CD14 | 0.991 | 0.988 | 0.976 | 0.971 |
CD15 | 0.832 | 0.829 | 0.796 | 0.787 |
CD19 | 0.742 | 0.649 | 0.377 | 0.358 |
Mean | 0.889 | 0.859 | 0.784 | 0.768 |
Mean cell-type proportion | ||||
CD3 (0.28) | 0.30 | 0.27 | 0.30 | 0.28 |
CD14 (0.13) | 0.14 | 0.14 | 0.16 | 0.17 |
CD15 (0.58) | 0.52 | 0.53 | 0.50 | 0.51 |
CD19 (0.08) | 0.05 | 0.05 | 0.04 | 0.04 |
Standard deviation of cell-type proportion | ||||
CD3 (0.20) | 0.22 | 0.23 | 0.22 | 0.23 |
CD14 (0.03) | 0.06 | 0.07 | 0.09 | 0.09 |
CD15 (0.20) | 0.19 | 0.20 | 0.20 | 0.20 |
CD19 (0.03) | 0.05 | 0.05 | 0.05 | 0.05 |
RMSE | ||||
CD3 | 0.042 | 0.057 | 0.047 | 0.067 |
CD14 | 0.042 | 0.048 | 0.073 | 0.081 |
CD15 | 0.026 | 0.029 | 0.049 | 0.047 |
CD19 | 0.040 | 0.040 | 0.055 | 0.057 |
Mean | 0.038 | 0.044 | 0.056 | 0.063 |