Skip to main content

Table 2 Optimal parameter settings as evaluated by BIC

From: Fast parallel construction of variable-length Markov chains

Organism Min count Max depth
Pandoravirus salinus *5 4
Sorangium cellulosum 300 6
Drosophila melanogaster *2 7
Oryza sativa 400 12
Symbiodinium kawagutii 1000 13
Homo sapiens 800 15
Palaemon carinicauda 1000 15
Pinus taeda 1000 15
  1. The * denotes where the min count parameter setting does not impact the optimum, as all k-mers are more frequent than 1000