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Table 2 Optimal parameter settings as evaluated by BIC

From: Fast parallel construction of variable-length Markov chains

Organism

Min count

Max depth

Pandoravirus salinus

*5

4

Sorangium cellulosum

300

6

Drosophila melanogaster

*2

7

Oryza sativa

400

12

Symbiodinium kawagutii

1000

13

Homo sapiens

800

15

Palaemon carinicauda

1000

15

Pinus taeda

1000

15

  1. The * denotes where the min count parameter setting does not impact the optimum, as all k-mers are more frequent than 1000
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BMC Bioinformatics

ISSN: 1471-2105

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