Decline of protein structure rigidity with interatomic distance

Carugo, Oliviero

doi:10.1186/s12859-021-04393-0

BMC Bioinformatics

Table 1 Anisotropic Delta-u values (× 1000; Å) as a function of the Euclidean distance (horizontal, Å) and of the covalent separation (vertical)

From: Decline of protein structure rigidity with interatomic distance

	1.5	2.5	3.5	4.5	5.5	6.5	7.5	8.5	9.5	10.5	11.5	12.5	13.5	14.5	15.5	16.5	17.5	18.5	19.5	20.5	21.5	22.5	23.5	24.5	25.5	26.5	27.5	28.5	29.5	30.5
1	3
2		4	3
3		5	5	5
4		7	6	6	7
5		8	6	7	7	7
6			7	8	8	8	7
7			9	8	9	10	9	8
8		9	10	9	9	10	10	9	9
9			9	10	10	10	10	10	10	9
10			9	10	10	10	10	11	11	10	8
11		11	9	10	10	10	10	10	11	10	9	8	10
12			10	10	11	12	11	11	11	11	11	10	8	11
13			11	10	11	11	11	11	11	11	11	10	10	9	9
14		10	11	10	10	11	12	12	11	12	11	11	11	10	9	8
15		9	11	10	10	11	11	11	11	11	11	11	10	10	10	9	8
16			10	10	10	11	11	12	11	11	11	11	11	10	10	9	9	10
17			11	11	10	11	11	12	12	12	12	11	11	11	11	10	10	9	9
18			10	11	11	11	12	12	12	12	12	12	11	12	11	11	10	10	10	9
19			12	12	11	12	12	13	13	13	13	13	12	12	12	12	11	11	10	10	10
20			13	11	11	12	12	13	13	13	13	13	12	12	12	12	11	11	11	11	10	11
21			14	13	13	13	13	14	14	14	14	14	13	13	13	13	13	13	12	12	11	11	13
22			14	13	13	13	13	14	14	13	14	13	13	13	13	13	13	13	12	12	12	12	12	13
23			15	13	13	14	14	14	14	14	14	14	14	13	13	13	13	13	13	12	12	12	12	12	12
24			17	14	15	15	15	15	15	15	15	15	15	15	14	14	14	14	15	14	13	13	13	12	12	14
25			19	16	17	17	17	17	16	17	17	17	16	17	16	15	15	15	15	16	14	14	13	15	14	15	15
26			18	16	19	18	18	17	17	17	16	16	16	16	16	16	16	16	16	16	16	15	14	13	14	14	13	17
27			23	20	22	21	20	19	18	18	18	17	17	17	17	17	17	17	18	17	17	17	15	15	15	15	16	15	18
28			23	24	21	23	21	20	18	18	17	18	17	17	17	17	17	17	17	17	18	17	17	16	15	15	17	18	16	20
29			27	22	22	22	20	19	18	18	17	17	17	17	16	16	17	16	17	16	16	17	17	16	15	14	15	16	17	15
30			27	21	23	21	19	17	18	18	17	17	17	18	17	16	16	17	17	16	17	17	17	16	15	15	15	15	16	17
31			28	23	22	21	19	18	18	17	18	18	18	18	18	17	17	17	16	17	17	17	17	18	17	16	16	16	20	19
32			25	23	22	20	18	18	17	17	18	17	17	17	17	17	17	17	16	17	16	16	17	17	17	17	16	16	18	20
33			18	24	22	22	21	19	19	18	18	18	17	18	19	19	18	18	17	18	16	16	16	16	16	17	17	16	18	18
34			20	21	22	21	21	19	19	18	18	18	17	17	17	18	17	17	17	17	17	16	16	16	16	16	16	16	15	16
35			14	25	24	22	20	20	19	19	18	18	18	18	17	18	18	18	18	18	18	18	17	17	17	18	19	18	19	19
36			17	21	20	19	20	20	20	20	20	19	19	18	18	18	19	19	19	19	19	19	18	18	17	17	18	18	17	17
37			15	20	18	19	19	19	21	20	19	20	19	19	18	18	18	19	19	19	19	18	19	18	19	19	20	19	19	17
38			18	21	20	20	19	19	19	19	19	19	19	18	18	18	19	18	18	18	18	18	18	18	18	19	19	20	20	19
39			21	19	19	19	18	18	19	20	19	19	19	18	18	19	18	19	18	18	18	18	18	18	18	19	19	20	19	20
40			23	19	18	18	19	18	19	19	19	18	19	19	19	19	19	18	19	18	18	18	19	18	18	18	18	19	18	19

Delta-u values are not provided if there are less than 50 observations. The estimated standard errors, not reported for simplicity, oscillates from 1 to 2 (× 1000; Å)

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ISSN: 1471-2105

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	1.5	2.5	3.5	4.5	5.5	6.5	7.5	8.5	9.5	10.5	11.5	12.5	13.5	14.5	15.5	16.5	17.5	18.5	19.5	20.5	21.5	22.5	23.5	24.5	25.5	26.5	27.5	28.5	29.5	30.5
1	3
2		4	3
3		5	5	5
4		7	6	6	7
5		8	6	7	7	7
6			7	8	8	8	7
7			9	8	9	10	9	8
8		9	10	9	9	10	10	9	9
9			9	10	10	10	10	10	10	9
10			9	10	10	10	10	11	11	10	8
11		11	9	10	10	10	10	10	11	10	9	8	10
12			10	10	11	12	11	11	11	11	11	10	8	11
13			11	10	11	11	11	11	11	11	11	10	10	9	9
14		10	11	10	10	11	12	12	11	12	11	11	11	10	9	8
15		9	11	10	10	11	11	11	11	11	11	11	10	10	10	9	8
16			10	10	10	11	11	12	11	11	11	11	11	10	10	9	9	10
17			11	11	10	11	11	12	12	12	12	11	11	11	11	10	10	9	9
18			10	11	11	11	12	12	12	12	12	12	11	12	11	11	10	10	10	9
19			12	12	11	12	12	13	13	13	13	13	12	12	12	12	11	11	10	10	10
20			13	11	11	12	12	13	13	13	13	13	12	12	12	12	11	11	11	11	10	11
21			14	13	13	13	13	14	14	14	14	14	13	13	13	13	13	13	12	12	11	11	13
22			14	13	13	13	13	14	14	13	14	13	13	13	13	13	13	13	12	12	12	12	12	13
23			15	13	13	14	14	14	14	14	14	14	14	13	13	13	13	13	13	12	12	12	12	12	12
24			17	14	15	15	15	15	15	15	15	15	15	15	14	14	14	14	15	14	13	13	13	12	12	14
25			19	16	17	17	17	17	16	17	17	17	16	17	16	15	15	15	15	16	14	14	13	15	14	15	15
26			18	16	19	18	18	17	17	17	16	16	16	16	16	16	16	16	16	16	16	15	14	13	14	14	13	17
27			23	20	22	21	20	19	18	18	18	17	17	17	17	17	17	17	18	17	17	17	15	15	15	15	16	15	18
28			23	24	21	23	21	20	18	18	17	18	17	17	17	17	17	17	17	17	18	17	17	16	15	15	17	18	16	20
29			27	22	22	22	20	19	18	18	17	17	17	17	16	16	17	16	17	16	16	17	17	16	15	14	15	16	17	15
30			27	21	23	21	19	17	18	18	17	17	17	18	17	16	16	17	17	16	17	17	17	16	15	15	15	15	16	17
31			28	23	22	21	19	18	18	17	18	18	18	18	18	17	17	17	16	17	17	17	17	18	17	16	16	16	20	19
32			25	23	22	20	18	18	17	17	18	17	17	17	17	17	17	17	16	17	16	16	17	17	17	17	16	16	18	20
33			18	24	22	22	21	19	19	18	18	18	17	18	19	19	18	18	17	18	16	16	16	16	16	17	17	16	18	18
34			20	21	22	21	21	19	19	18	18	18	17	17	17	18	17	17	17	17	17	16	16	16	16	16	16	16	15	16
35			14	25	24	22	20	20	19	19	18	18	18	18	17	18	18	18	18	18	18	18	17	17	17	18	19	18	19	19
36			17	21	20	19	20	20	20	20	20	19	19	18	18	18	19	19	19	19	19	19	18	18	17	17	18	18	17	17
37			15	20	18	19	19	19	21	20	19	20	19	19	18	18	18	19	19	19	19	18	19	18	19	19	20	19	19	17
38			18	21	20	20	19	19	19	19	19	19	19	18	18	18	19	18	18	18	18	18	18	18	18	19	19	20	20	19
39			21	19	19	19	18	18	19	20	19	19	19	18	18	19	18	19	18	18	18	18	18	18	18	19	19	20	19	20
40			23	19	18	18	19	18	19	19	19	18	19	19	19	19	19	18	19	18	18	18	19	18	18	18	18	19	18	19

	1.5	2.5	3.5	4.5	5.5	6.5	7.5	8.5	9.5	10.5	11.5	12.5	13.5	14.5	15.5	16.5	17.5	18.5	19.5	20.5	21.5	22.5	23.5	24.5	25.5	26.5	27.5	28.5	29.5	30.5
1	3
2		4	3
3		5	5	5
4		7	6	6	7
5		8	6	7	7	7
6			7	8	8	8	7
7			9	8	9	10	9	8
8		9	10	9	9	10	10	9	9
9			9	10	10	10	10	10	10	9
10			9	10	10	10	10	11	11	10	8
11		11	9	10	10	10	10	10	11	10	9	8	10
12			10	10	11	12	11	11	11	11	11	10	8	11
13			11	10	11	11	11	11	11	11	11	10	10	9	9
14		10	11	10	10	11	12	12	11	12	11	11	11	10	9	8
15		9	11	10	10	11	11	11	11	11	11	11	10	10	10	9	8
16			10	10	10	11	11	12	11	11	11	11	11	10	10	9	9	10
17			11	11	10	11	11	12	12	12	12	11	11	11	11	10	10	9	9
18			10	11	11	11	12	12	12	12	12	12	11	12	11	11	10	10	10	9
19			12	12	11	12	12	13	13	13	13	13	12	12	12	12	11	11	10	10	10
20			13	11	11	12	12	13	13	13	13	13	12	12	12	12	11	11	11	11	10	11
21			14	13	13	13	13	14	14	14	14	14	13	13	13	13	13	13	12	12	11	11	13
22			14	13	13	13	13	14	14	13	14	13	13	13	13	13	13	13	12	12	12	12	12	13
23			15	13	13	14	14	14	14	14	14	14	14	13	13	13	13	13	13	12	12	12	12	12	12
24			17	14	15	15	15	15	15	15	15	15	15	15	14	14	14	14	15	14	13	13	13	12	12	14
25			19	16	17	17	17	17	16	17	17	17	16	17	16	15	15	15	15	16	14	14	13	15	14	15	15
26			18	16	19	18	18	17	17	17	16	16	16	16	16	16	16	16	16	16	16	15	14	13	14	14	13	17
27			23	20	22	21	20	19	18	18	18	17	17	17	17	17	17	17	18	17	17	17	15	15	15	15	16	15	18
28			23	24	21	23	21	20	18	18	17	18	17	17	17	17	17	17	17	17	18	17	17	16	15	15	17	18	16	20
29			27	22	22	22	20	19	18	18	17	17	17	17	16	16	17	16	17	16	16	17	17	16	15	14	15	16	17	15
30			27	21	23	21	19	17	18	18	17	17	17	18	17	16	16	17	17	16	17	17	17	16	15	15	15	15	16	17
31			28	23	22	21	19	18	18	17	18	18	18	18	18	17	17	17	16	17	17	17	17	18	17	16	16	16	20	19
32			25	23	22	20	18	18	17	17	18	17	17	17	17	17	17	17	16	17	16	16	17	17	17	17	16	16	18	20
33			18	24	22	22	21	19	19	18	18	18	17	18	19	19	18	18	17	18	16	16	16	16	16	17	17	16	18	18
34			20	21	22	21	21	19	19	18	18	18	17	17	17	18	17	17	17	17	17	16	16	16	16	16	16	16	15	16
35			14	25	24	22	20	20	19	19	18	18	18	18	17	18	18	18	18	18	18	18	17	17	17	18	19	18	19	19
36			17	21	20	19	20	20	20	20	20	19	19	18	18	18	19	19	19	19	19	19	18	18	17	17	18	18	17	17
37			15	20	18	19	19	19	21	20	19	20	19	19	18	18	18	19	19	19	19	18	19	18	19	19	20	19	19	17
38			18	21	20	20	19	19	19	19	19	19	19	18	18	18	19	18	18	18	18	18	18	18	18	19	19	20	20	19
39			21	19	19	19	18	18	19	20	19	19	19	18	18	19	18	19	18	18	18	18	18	18	18	19	19	20	19	20
40			23	19	18	18	19	18	19	19	19	18	19	19	19	19	19	18	19	18	18	18	19	18	18	18	18	19	18	19

	1.5	2.5	3.5	4.5	5.5	6.5	7.5	8.5	9.5	10.5	11.5	12.5	13.5	14.5	15.5	16.5	17.5	18.5	19.5	20.5	21.5	22.5	23.5	24.5	25.5	26.5	27.5	28.5	29.5	30.5
1	3
2		4	3
3		5	5	5
4		7	6	6	7
5		8	6	7	7	7
6			7	8	8	8	7
7			9	8	9	10	9	8
8		9	10	9	9	10	10	9	9
9			9	10	10	10	10	10	10	9
10			9	10	10	10	10	11	11	10	8
11		11	9	10	10	10	10	10	11	10	9	8	10
12			10	10	11	12	11	11	11	11	11	10	8	11
13			11	10	11	11	11	11	11	11	11	10	10	9	9
14		10	11	10	10	11	12	12	11	12	11	11	11	10	9	8
15		9	11	10	10	11	11	11	11	11	11	11	10	10	10	9	8
16			10	10	10	11	11	12	11	11	11	11	11	10	10	9	9	10
17			11	11	10	11	11	12	12	12	12	11	11	11	11	10	10	9	9
18			10	11	11	11	12	12	12	12	12	12	11	12	11	11	10	10	10	9
19			12	12	11	12	12	13	13	13	13	13	12	12	12	12	11	11	10	10	10
20			13	11	11	12	12	13	13	13	13	13	12	12	12	12	11	11	11	11	10	11
21			14	13	13	13	13	14	14	14	14	14	13	13	13	13	13	13	12	12	11	11	13
22			14	13	13	13	13	14	14	13	14	13	13	13	13	13	13	13	12	12	12	12	12	13
23			15	13	13	14	14	14	14	14	14	14	14	13	13	13	13	13	13	12	12	12	12	12	12
24			17	14	15	15	15	15	15	15	15	15	15	15	14	14	14	14	15	14	13	13	13	12	12	14
25			19	16	17	17	17	17	16	17	17	17	16	17	16	15	15	15	15	16	14	14	13	15	14	15	15
26			18	16	19	18	18	17	17	17	16	16	16	16	16	16	16	16	16	16	16	15	14	13	14	14	13	17
27			23	20	22	21	20	19	18	18	18	17	17	17	17	17	17	17	18	17	17	17	15	15	15	15	16	15	18
28			23	24	21	23	21	20	18	18	17	18	17	17	17	17	17	17	17	17	18	17	17	16	15	15	17	18	16	20
29			27	22	22	22	20	19	18	18	17	17	17	17	16	16	17	16	17	16	16	17	17	16	15	14	15	16	17	15
30			27	21	23	21	19	17	18	18	17	17	17	18	17	16	16	17	17	16	17	17	17	16	15	15	15	15	16	17
31			28	23	22	21	19	18	18	17	18	18	18	18	18	17	17	17	16	17	17	17	17	18	17	16	16	16	20	19
32			25	23	22	20	18	18	17	17	18	17	17	17	17	17	17	17	16	17	16	16	17	17	17	17	16	16	18	20
33			18	24	22	22	21	19	19	18	18	18	17	18	19	19	18	18	17	18	16	16	16	16	16	17	17	16	18	18
34			20	21	22	21	21	19	19	18	18	18	17	17	17	18	17	17	17	17	17	16	16	16	16	16	16	16	15	16
35			14	25	24	22	20	20	19	19	18	18	18	18	17	18	18	18	18	18	18	18	17	17	17	18	19	18	19	19
36			17	21	20	19	20	20	20	20	20	19	19	18	18	18	19	19	19	19	19	19	18	18	17	17	18	18	17	17
37			15	20	18	19	19	19	21	20	19	20	19	19	18	18	18	19	19	19	19	18	19	18	19	19	20	19	19	17
38			18	21	20	20	19	19	19	19	19	19	19	18	18	18	19	18	18	18	18	18	18	18	18	19	19	20	20	19
39			21	19	19	19	18	18	19	20	19	19	19	18	18	19	18	19	18	18	18	18	18	18	18	19	19	20	19	20
40			23	19	18	18	19	18	19	19	19	18	19	19	19	19	19	18	19	18	18	18	19	18	18	18	18	19	18	19