Table 5 The top 20 genes relevant genes with breast cancer derived from the 985 pathogenetic transcripts and the 1970 transcripts
From: Deep learning for cancer type classification and driver gene identification
985 transcripts | 1970 transcripts | ||
|---|---|---|---|
Germline | Cancer | Germline | Cancer |
TCF3 | GATA3 | FOXP1 | CASP8 |
FOXP1 | APC | TCF3 | PALB2 |
LEF1 | RNF213 | SPATA31A3 | RXFP3 |
PAFAH1B2 | PIK3CA | PAFAH1B2 | DOCK2 |
BLM | PPP2R1A | CCNE1 | ANK1 |
PPFIBP1 | CDH1 | ADAM23 | ADAM23 |
PALB2 | CHD2 | NCOA4 | ITK |
MUC4 | RUNX1 | KC6 | TCF3 |
CCDC6 | MSH6 | PALB2 | CCNE1 |
LIFR | CNBD1 | AMOT | FOXP1 |
MITF | KMT2C | LEF1 | ABHD13 |
CCNE1 | ARID1A | CPEB2 | SPATA31A3 |
ZCCHC8 | TBX3 | SPATA31D1 | XPO6 |
TP53 | KRAS | IL21 | FRYL |
FOXO4 | CHD4 | BLM | RFC5 |
EBF1 | KMT2D | ITK | SDHAF2 |
TERT | NRAS | ZNF507 | POU4F1 |
GMPS | MAP3K1 | CCDC6 | PICALM |
CCNC | HLA-A | TERT | LEF1 |