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Table 2 Summary of genomic visualization tools

From: CoolBox: a flexible toolkit for visual analysis of genomics data

Tools Programming language API plot CLI plot Online access
CoolBox Python \(\checkmark\) \(\checkmark\) \(\checkmark\)
pyGenomeTracks Python   \(\checkmark\)  
gcMapExplorer Python \(\checkmark\)   
HiCPlotter Python   \(\checkmark\)  
HiGlass Python, HTML, CSS, JS \(\checkmark\)   \(\checkmark\)
YueLab Browser HTML, CSS, JS    \(\checkmark\)
WashU Browser HTML, CSS, JS    \(\checkmark\)
TADkit HTML, CSS, JS    \(\checkmark\)
JuiceBox.js HTML, CSS, JS    \(\checkmark\)
JuiceBox Java    
GUI Input Installation Customization
Web and Jupyter Raw data Bioconda or PyPI Python knowledge, very easy
  Raw data PyPI Python knowledge, easy
Local Preprocessed data PyPI Python knowledge, easy
  Preprocessed data Manually install
Web and Jupyter Preprocessed data, via network Docker Web knowledge
Web Via network   
Web Via network   
Web Preprocessed data, via network Manually install  
Web Via network   
Local Raw data Download