|
Tools
|
Programming language
|
API plot
|
CLI plot
|
Online access
|
|---|
|
CoolBox
|
Python
|
\(\checkmark\)
|
\(\checkmark\)
|
\(\checkmark\)
|
|
pyGenomeTracks
|
Python
| |
\(\checkmark\)
| |
|
gcMapExplorer
|
Python
|
\(\checkmark\)
| | |
|
HiCPlotter
|
Python
| |
\(\checkmark\)
| |
|
HiGlass
|
Python, HTML, CSS, JS
|
\(\checkmark\)
| |
\(\checkmark\)
|
|
YueLab Browser
|
HTML, CSS, JS
| | |
\(\checkmark\)
|
|
WashU Browser
|
HTML, CSS, JS
| | |
\(\checkmark\)
|
|
TADkit
|
HTML, CSS, JS
| | |
\(\checkmark\)
|
|
JuiceBox.js
|
HTML, CSS, JS
| | |
\(\checkmark\)
|
|
JuiceBox
|
Java
| | | |
|
GUI
|
Input
|
Installation
|
Customization
|
|---|
|
Web and Jupyter
|
Raw data
|
Bioconda or PyPI
|
Python knowledge, very easy
|
| |
Raw data
|
PyPI
|
Python knowledge, easy
|
|
Local
|
Preprocessed data
|
PyPI
|
Python knowledge, easy
|
| |
Preprocessed data
|
Manually install
|
|
Web and Jupyter
|
Preprocessed data, via network
|
Docker
|
Web knowledge
|
|
Web
|
Via network
| | |
|
Web
|
Via network
| | |
|
Web
|
Preprocessed data, via network
|
Manually install
| |
|
Web
|
Via network
| | |
|
Local
|
Raw data
|
Download
| |
