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Table 3 Paired-end pipeline mean metrics across all mocks.*

From: Concatenation of paired-end reads improves taxonomic classification of amplicons for profiling microbial communities

Pipeline

Precision mean

Recall mean

F-Measure mean

LCs

0.957

0.864

0.897

QBp

0.916

0.852

0.874

LMd

0.938

0.832

0.871

LBp

0.953

0.827

0.858

QMd

0.953

0.803

0.854

LMp

0.940

0.818

0.847

QMp

0.915

0.799

0.831

NBp

0.859

0.809

0.830

QCs

0.962

0.753

0.821

NMp

0.854

0.797

0.820

NMd

0.959

0.694

0.766

NCs

0.960

0.670

0.731

QdMd

0.869

0.478

0.551

  1. *Ordered by descending average F-measure using SILVA reference database and ASV abundance threshold cutoff of 0.01%