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Fig. 6 | BMC Bioinformatics

Fig. 6

From: EFMlrs: a Python package for elementary flux mode enumeration via lexicographic reverse search

Fig. 6

Visualization of the ratios between multiple possible occurrences of EFVs found in a general polyhedron P (5) and the set of unique EFVs found in the cone shapes (FC (9), PC (7)) of EColiCore2 [29] with different reaction bounds applied (Table 2). The x-axis shows the ratio between the number of EFVs found in the cone shapes and the number of EFVs found in the polyhedron. The y-axis shows the factor between the run times of a flux cone FC and a general polyhedron P, respectively a polyhedral cone PC. The results of P and PC are arranged on the y-axis according to their factor. Along the dashed vertical line at (1, 0) the results from the polyhedral cone PC (blue) are located on the x-axis and according to their uniqueness accounted for as 1. The results from P (red) are arranged along the x-axis according to their multiples in comparison to the results of the cones. Each scenario was given a specific symbol as shown in the boxed legend

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