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Table 3 Dimensions of the input matrices for the different scenarios of EColiCore2 [29] with various reaction bounds (see Table 2) applied. All matrices are compressed and redundant rows are removed. Compressions were applied through EFMlrs and redundant rows were removed using the lrs redund function [1]

From: EFMlrs: a Python package for elementary flux mode enumeration via lexicographic reverse search

Bound(s)

Geometry

Rows × columns

ATPM

FC, PC

107 \(\times\) 82

P

106 \(\times\) 81

GlcUP O2Up

FC, PC

107 \(\times\) 82

P

107 \(\times\) 81

ATPM,GlcUp &

ATPM,O2Up

FC, PC

107 \(\times\) 82

P

107 \(\times\) 81

GlcUP,O2Up &

ATPM,GlcUp, O2Up

FC

109 \(\times\) 83

PC

108 \(\times\) 82

P

108 \(\times\) 81