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Table 2 Mean minimum test MSE and optimal regularization parameters over 5 CV-folds for RR, LASSO, EN and LAVA evaluated on the pig data

From: A proximal LAVA method for genome-wide association and prediction of traits with mixed inheritance patterns

Method

minMSE

\(\lambda _1\)

\(\lambda _2\)

Time

RR

0.853

59719

 

43.4

LASSO

0.875

49.94

 

229.9

EN

0.853

18.04

9046.7

49.4

LAVA

0.850

53.81

73345

336.3

  1. Time in seconds is the average over the folds for the last evaluation with optimized regularization parameters
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BMC Bioinformatics

ISSN: 1471-2105

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